I'm just about through Scooby-doo Mystery Inc, and they lean a bit on Mayan/Aztec storylines -- what a wonderfully evocative era that seems to have absolutely no hold on mainstream culture! Were there any Manga artists that glommed onto it? Western would be cool too, unless it's about gay Mayans (etc)
As a side-note, French comics (Bande dessinee) had a bunch of wonderful south american stuff, but the one torrent that collected thousands of them seems to be dead.
It's not manga but I'm pretty sure at least one of the TinTin comics had meso stuff in it.
Ah, yeah, TinTin had a few books like that -- they were wonderful. The series in Peru was particularly evocative. As I mentioned, French comics tackled this topic very well, but they're no longer 'available'.